J4_8BGH_002

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGH_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1216

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8BGH|1|0|G|297
8BGH|1|0|G|298
8BGH|1|0|A|299
8BGH|1|0|A|300
8BGH|1|0|G|301
*
8BGH|1|0|C|316
8BGH|1|0|G|317
8BGH|1|0|C|318
8BGH|1|0|G|319
*
8BGH|1|0|C|323
8BGH|1|0|A|324
8BGH|1|0|G|325
*
8BGH|1|0|C|337
8BGH|1|0|G|338
8BGH|1|0|U|339
8BGH|1|0|A|340
8BGH|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24