J4_8BGH_003
3D structure
- PDB id
- 8BGH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 8BGH|1|0|U|653, 8BGH|1|0|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BGH_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.3267
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BGH|1|0|C|601
8BGH|1|0|A|602
8BGH|1|0|A|603
8BGH|1|0|G|604
*
8BGH|1|0|C|624
8BGH|1|0|G|625
8BGH|1|0|A|626
8BGH|1|0|A|627
8BGH|1|0|G|628
*
8BGH|1|0|C|635
8BGH|1|0|G|636
8BGH|1|0|A|637
8BGH|1|0|G|638
*
8BGH|1|0|C|650
8BGH|1|0|G|651
8BGH|1|0|U|652
8BGH|1|0|U|653
8BGH|1|0|A|654
8BGH|1|0|A|655
8BGH|1|0|G|656
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain d
- 50S ribosomal protein L35
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