J4_8BGH_009

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BGH|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGH_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1622

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8BGH|1|0|C|1833
8BGH|1|0|U|1834
8BGH|1|0|G|1835
*
8BGH|1|0|C|1905
8BGH|1|0|G|1906
*
8BGH|1|0|C|1924
8BGH|1|0|C|1925
8BGH|1|0|U|1926
8BGH|1|0|A|1927
8BGH|1|0|A|1928
8BGH|1|0|G|1929
8BGH|1|0|G|1930
8BGH|1|0|U|1931
8BGH|1|0|A|1932
8BGH|1|0|G|1933
*
8BGH|1|0|C|1967
8BGH|1|0|G|1968
8BGH|1|0|A|1969
8BGH|1|0|A|1970
8BGH|1|0|U|1971
8BGH|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2