3D structure

PDB id
8BGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8BGH|1|2|C|576, 8BGH|1|2|A|815, 8BGH|1|2|C|817, 8BGH|1|2|A|819
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8BGH_014 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.1382
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8BGH|1|2|G|575
8BGH|1|2|C|576
8BGH|1|2|G|577
*
8BGH|1|2|C|764
8BGH|1|2|G|765
8BGH|1|2|A|766
8BGH|1|2|A|767
8BGH|1|2|A|768
8BGH|1|2|G|769
*
8BGH|1|2|C|810
8BGH|1|2|C|811
8BGH|1|2|G|812
8BGH|1|2|U|813
8BGH|1|2|A|814
8BGH|1|2|A|815
8BGH|1|2|A|816
8BGH|1|2|C|817
8BGH|1|2|G|818
8BGH|1|2|A|819
8BGH|1|2|U|820
8BGH|1|2|G|821
*
8BGH|1|2|C|879
8BGH|1|2|C|880

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain l
30S ribosomal protein S8
Chain p
30S ribosomal protein S12
Chain s
30S ribosomal protein S15
Chain u
30S ribosomal protein S17

Coloring options:


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