J4_8BGH_016

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8BGH|1|0|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGH_016 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1463

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BGH|1|0|G|1310
8BGH|1|0|G|1311
8BGH|1|0|U|1312
8BGH|1|0|U|1313
8BGH|1|0|C|1314
*
8BGH|1|0|G|1338
8BGH|1|0|G|1339
8BGH|1|0|U|1340
8BGH|1|0|G|1341
8BGH|1|0|A|1342
8BGH|1|0|G|1343
*
8BGH|1|0|C|1404
8BGH|1|0|U|1405
*
8BGH|1|0|A|1597
8BGH|1|0|A|1598
8BGH|1|0|U|1599
8BGH|1|0|C|1600
8BGH|1|0|G|1601
8BGH|1|0|U|1602
8BGH|1|0|A|1603
8BGH|1|0|C|1604

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain c

50S ribosomal protein L34