J4_8BH4_014

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

8BH4|1|2|A|572, 8BH4|1|2|C|576, 8BH4|1|2|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|2|C|569
8BH4|1|2|G|570
8BH4|1|2|U|571
8BH4|1|2|A|572
8BH4|1|2|A|573
8BH4|1|2|A|574
8BH4|1|2|G|575
8BH4|1|2|C|576
8BH4|1|2|G|577
*
8BH4|1|2|C|764
8BH4|1|2|G|765
8BH4|1|2|A|766
8BH4|1|2|A|767
8BH4|1|2|A|768
8BH4|1|2|G|769
*
8BH4|1|2|C|810
8BH4|1|2|C|811
8BH4|1|2|G|812
8BH4|1|2|U|813
8BH4|1|2|A|814
8BH4|1|2|A|815
8BH4|1|2|A|816
8BH4|1|2|C|817
8BH4|1|2|G|818
8BH4|1|2|A|819
8BH4|1|2|U|820
8BH4|1|2|G|821
*
8BH4|1|2|C|879
8BH4|1|2|C|880
8BH4|1|2|G|881

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain l

30S ribosomal protein S8

Chain p

30S ribosomal protein S12

Chain s

30S ribosomal protein S15

Chain u

30S ribosomal protein S17