J4_8BH4_016

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUAG*CAG*UUGGUCGC*GCA

Length

18 nucleotides

Bulged bases

8BH4|1|5|U|8, 8BH4|1|5|U|47, 8BH4|1|5|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|5|U|7
8BH4|1|5|U|8
8BH4|1|5|A|9
8BH4|1|5|G|10
*
8BH4|1|5|C|25
8BH4|1|5|A|26
8BH4|1|5|G|27
*
8BH4|1|5|U|43
8BH4|1|5|U|44
8BH4|1|5|G|45
8BH4|1|5|G|46
8BH4|1|5|U|47
8BH4|1|5|C|48
8BH4|1|5|G|49
8BH4|1|5|C|50
*
8BH4|1|5|G|64
8BH4|1|5|C|65
8BH4|1|5|A|66

Current chains

Chain 5

Dipeptidyl A-site tRNA(Lys)

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA