J4_8BHJ_002
3D structure
- PDB id
- 8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHJ_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.1247
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BHJ|1|0|G|297
8BHJ|1|0|G|298
8BHJ|1|0|A|299
8BHJ|1|0|A|300
8BHJ|1|0|G|301
*
8BHJ|1|0|C|316
8BHJ|1|0|G|317
8BHJ|1|0|C|318
8BHJ|1|0|G|319
*
8BHJ|1|0|C|323
8BHJ|1|0|A|324
8BHJ|1|0|G|325
*
8BHJ|1|0|C|337
8BHJ|1|0|G|338
8BHJ|1|0|U|339
8BHJ|1|0|A|340
8BHJ|1|0|C|341
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L24
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