J4_8BHJ_003

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8BHJ|1|0|U|653, 8BHJ|1|0|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHJ_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2293

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BHJ|1|0|C|601
8BHJ|1|0|A|602
8BHJ|1|0|A|603
8BHJ|1|0|G|604
*
8BHJ|1|0|C|624
8BHJ|1|0|G|625
8BHJ|1|0|A|626
8BHJ|1|0|A|627
8BHJ|1|0|G|628
*
8BHJ|1|0|C|635
8BHJ|1|0|G|636
8BHJ|1|0|A|637
8BHJ|1|0|G|638
*
8BHJ|1|0|C|650
8BHJ|1|0|G|651
8BHJ|1|0|U|652
8BHJ|1|0|U|653
8BHJ|1|0|A|654
8BHJ|1|0|A|655
8BHJ|1|0|G|656

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain d

50S ribosomal protein L35