J4_8BHJ_014

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

8BHJ|1|2|A|572, 8BHJ|1|2|C|576, 8BHJ|1|2|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHJ|1|2|C|569
8BHJ|1|2|G|570
8BHJ|1|2|U|571
8BHJ|1|2|A|572
8BHJ|1|2|A|573
8BHJ|1|2|A|574
8BHJ|1|2|G|575
8BHJ|1|2|C|576
8BHJ|1|2|G|577
*
8BHJ|1|2|C|764
8BHJ|1|2|G|765
8BHJ|1|2|A|766
8BHJ|1|2|A|767
8BHJ|1|2|A|768
8BHJ|1|2|G|769
*
8BHJ|1|2|C|810
8BHJ|1|2|C|811
8BHJ|1|2|G|812
8BHJ|1|2|U|813
8BHJ|1|2|A|814
8BHJ|1|2|A|815
8BHJ|1|2|A|816
8BHJ|1|2|C|817
8BHJ|1|2|G|818
8BHJ|1|2|A|819
8BHJ|1|2|U|820
8BHJ|1|2|G|821
*
8BHJ|1|2|C|879
8BHJ|1|2|C|880
8BHJ|1|2|G|881

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain l

30S ribosomal protein S8

Chain p

30S ribosomal protein S12

Chain s

30S ribosomal protein S15

Chain u

30S ribosomal protein S17