J4_8BHJ_016
3D structure
- PDB id
- 8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- UUAGC*GCAGU*AUUGGUCGCAG*CUGCA
- Length
- 26 nucleotides
- Bulged bases
- 8BHJ|1|5|U|8, 8BHJ|1|5|U|47, 8BHJ|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHJ|1|5|U|7
8BHJ|1|5|U|8
8BHJ|1|5|A|9
8BHJ|1|5|G|10
8BHJ|1|5|C|11
*
8BHJ|1|5|G|24
8BHJ|1|5|C|25
8BHJ|1|5|A|26
8BHJ|1|5|G|27
8BHJ|1|5|U|28
*
8BHJ|1|5|A|42
8BHJ|1|5|U|43
8BHJ|1|5|U|44
8BHJ|1|5|G|45
8BHJ|1|5|G|46
8BHJ|1|5|U|47
8BHJ|1|5|C|48
8BHJ|1|5|G|49
8BHJ|1|5|C|50
8BHJ|1|5|A|51
8BHJ|1|5|G|52
*
8BHJ|1|5|C|62
8BHJ|1|5|U|63
8BHJ|1|5|G|64
8BHJ|1|5|C|65
8BHJ|1|5|A|66
Current chains
- Chain 5
- Dipeptidyl A-site tRNA(Lys)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain J
- 50S ribosomal protein L16
Coloring options: