J4_8BHJ_019

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BHJ|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHJ_019 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1699

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8BHJ|1|0|C|1833
8BHJ|1|0|U|1834
8BHJ|1|0|G|1835
*
8BHJ|1|0|C|1905
8BHJ|1|0|G|1906
*
8BHJ|1|0|C|1924
8BHJ|1|0|C|1925
8BHJ|1|0|U|1926
8BHJ|1|0|A|1927
8BHJ|1|0|A|1928
8BHJ|1|0|G|1929
8BHJ|1|0|G|1930
8BHJ|1|0|U|1931
8BHJ|1|0|A|1932
8BHJ|1|0|G|1933
*
8BHJ|1|0|C|1967
8BHJ|1|0|G|1968
8BHJ|1|0|A|1969
8BHJ|1|0|A|1970
8BHJ|1|0|U|1971
8BHJ|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2