J4_8BHJ_021

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UUAG*CAG*UUGGUCG*CA

Length

16 nucleotides

Bulged bases

8BHJ|1|5|U|8, 8BHJ|1|5|U|47, 8BHJ|1|5|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHJ_021 not in the Motif Atlas

Homologous match to J4_7E8O_002

Geometric discrepancy: 0.2198

The information below is about J4_7E8O_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8BHJ|1|5|U|7
8BHJ|1|5|U|8
8BHJ|1|5|A|9
8BHJ|1|5|G|10
*
8BHJ|1|5|C|25
8BHJ|1|5|A|26
8BHJ|1|5|G|27
*
8BHJ|1|5|U|43
8BHJ|1|5|U|44
8BHJ|1|5|G|45
8BHJ|1|5|G|46
8BHJ|1|5|U|47
8BHJ|1|5|C|48
8BHJ|1|5|G|49
*
8BHJ|1|5|C|65
8BHJ|1|5|A|66

Current chains

Chain 5

Dipeptidyl A-site tRNA(Lys)

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA