J4_8BHL_003

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8BHL|1|0|U|653, 8BHL|1|0|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHL_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.311

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BHL|1|0|C|601
8BHL|1|0|A|602
8BHL|1|0|A|603
8BHL|1|0|G|604
*
8BHL|1|0|C|624
8BHL|1|0|G|625
8BHL|1|0|A|626
8BHL|1|0|A|627
8BHL|1|0|G|628
*
8BHL|1|0|C|635
8BHL|1|0|G|636
8BHL|1|0|A|637
8BHL|1|0|G|638
*
8BHL|1|0|C|650
8BHL|1|0|G|651
8BHL|1|0|U|652
8BHL|1|0|U|653
8BHL|1|0|A|654
8BHL|1|0|A|655
8BHL|1|0|G|656

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain d

50S ribosomal protein L35