J4_8BHL_009

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BHL|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHL_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1598

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8BHL|1|0|C|1833
8BHL|1|0|U|1834
8BHL|1|0|G|1835
*
8BHL|1|0|C|1905
8BHL|1|0|G|1906
*
8BHL|1|0|C|1924
8BHL|1|0|C|1925
8BHL|1|0|U|1926
8BHL|1|0|A|1927
8BHL|1|0|A|1928
8BHL|1|0|G|1929
8BHL|1|0|G|1930
8BHL|1|0|U|1931
8BHL|1|0|A|1932
8BHL|1|0|G|1933
*
8BHL|1|0|C|1967
8BHL|1|0|G|1968
8BHL|1|0|A|1969
8BHL|1|0|A|1970
8BHL|1|0|U|1971
8BHL|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2