J4_8BHN_002

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHN_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1262

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8BHN|1|0|G|297
8BHN|1|0|G|298
8BHN|1|0|A|299
8BHN|1|0|A|300
8BHN|1|0|G|301
*
8BHN|1|0|C|316
8BHN|1|0|G|317
8BHN|1|0|C|318
8BHN|1|0|G|319
*
8BHN|1|0|C|323
8BHN|1|0|A|324
8BHN|1|0|G|325
*
8BHN|1|0|C|337
8BHN|1|0|G|338
8BHN|1|0|U|339
8BHN|1|0|A|340
8BHN|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24