J4_8BHN_003

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8BHN|1|0|U|653, 8BHN|1|0|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHN_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2212

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BHN|1|0|C|601
8BHN|1|0|A|602
8BHN|1|0|A|603
8BHN|1|0|G|604
*
8BHN|1|0|C|624
8BHN|1|0|G|625
8BHN|1|0|A|626
8BHN|1|0|A|627
8BHN|1|0|G|628
*
8BHN|1|0|C|635
8BHN|1|0|G|636
8BHN|1|0|A|637
8BHN|1|0|G|638
*
8BHN|1|0|C|650
8BHN|1|0|G|651
8BHN|1|0|U|652
8BHN|1|0|U|653
8BHN|1|0|A|654
8BHN|1|0|A|655
8BHN|1|0|G|656

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain d

50S ribosomal protein L35