J4_8BHN_015
3D structure
- PDB id
- 8BHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- GG(4SU)GG*CGUC*GAAGGUCGU*GCCC
- Length
- 22 nucleotides
- Bulged bases
- 8BHN|1|4|4SU|7, 8BHN|1|4|U|47, 8BHN|1|4|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BHN|1|4|G|5
8BHN|1|4|G|6
8BHN|1|4|4SU|7
8BHN|1|4|G|8
8BHN|1|4|G|9
*
8BHN|1|4|C|25
8BHN|1|4|G|26
8BHN|1|4|U|27
8BHN|1|4|C|28
*
8BHN|1|4|G|42
8BHN|1|4|A|43
8BHN|1|4|A|44
8BHN|1|4|G|45
8BHN|1|4|G|46
8BHN|1|4|U|47
8BHN|1|4|C|48
8BHN|1|4|G|49
8BHN|1|4|U|50
*
8BHN|1|4|G|64
8BHN|1|4|C|65
8BHN|1|4|C|66
8BHN|1|4|C|67
Current chains
- Chain 4
- Deacylated P-site tRNA(fMet)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain J
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L27
- Chain q
- 30S ribosomal protein S13
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