J4_8BHN_021
3D structure
- PDB id
- 8BHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- UUAG*CAG*UUGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 8BHN|1|5|U|8, 8BHN|1|5|U|47, 8BHN|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BHN_021 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.2167
- The information below is about J4_7EQJ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8BHN|1|5|U|7
8BHN|1|5|U|8
8BHN|1|5|A|9
8BHN|1|5|G|10
*
8BHN|1|5|C|25
8BHN|1|5|A|26
8BHN|1|5|G|27
*
8BHN|1|5|U|43
8BHN|1|5|U|44
8BHN|1|5|G|45
8BHN|1|5|G|46
8BHN|1|5|U|47
8BHN|1|5|C|48
8BHN|1|5|G|49
*
8BHN|1|5|C|65
8BHN|1|5|A|66
Current chains
- Chain 5
- Dipeptidyl A-site tRNA(Lys)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: