J4_8BHP_005

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8BHP|1|0|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BHP_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1382

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BHP|1|0|G|1310
8BHP|1|0|G|1311
8BHP|1|0|U|1312
8BHP|1|0|U|1313
8BHP|1|0|C|1314
*
8BHP|1|0|G|1338
8BHP|1|0|G|1339
8BHP|1|0|U|1340
8BHP|1|0|G|1341
8BHP|1|0|A|1342
8BHP|1|0|G|1343
*
8BHP|1|0|C|1404
8BHP|1|0|U|1405
*
8BHP|1|0|A|1597
8BHP|1|0|A|1598
8BHP|1|0|U|1599
8BHP|1|0|C|1600
8BHP|1|0|G|1601
8BHP|1|0|U|1602
8BHP|1|0|A|1603
8BHP|1|0|C|1604

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain c

50S ribosomal protein L34