J4_8BIL_002

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1197

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8BIL|1|0|G|297
8BIL|1|0|G|298
8BIL|1|0|A|299
8BIL|1|0|A|300
8BIL|1|0|G|301
*
8BIL|1|0|C|316
8BIL|1|0|G|317
8BIL|1|0|C|318
8BIL|1|0|G|319
*
8BIL|1|0|C|323
8BIL|1|0|A|324
8BIL|1|0|G|325
*
8BIL|1|0|C|337
8BIL|1|0|G|338
8BIL|1|0|U|339
8BIL|1|0|A|340
8BIL|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24