J4_8BIL_003

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8BIL|1|0|U|653, 8BIL|1|0|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.314

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BIL|1|0|C|601
8BIL|1|0|A|602
8BIL|1|0|A|603
8BIL|1|0|G|604
*
8BIL|1|0|C|624
8BIL|1|0|G|625
8BIL|1|0|A|626
8BIL|1|0|A|627
8BIL|1|0|G|628
*
8BIL|1|0|C|635
8BIL|1|0|G|636
8BIL|1|0|A|637
8BIL|1|0|G|638
*
8BIL|1|0|C|650
8BIL|1|0|G|651
8BIL|1|0|U|652
8BIL|1|0|U|653
8BIL|1|0|A|654
8BIL|1|0|A|655
8BIL|1|0|G|656

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain d

50S ribosomal protein L35