J4_8BIL_005

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8BIL|1|0|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.133

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BIL|1|0|G|1310
8BIL|1|0|G|1311
8BIL|1|0|U|1312
8BIL|1|0|U|1313
8BIL|1|0|C|1314
*
8BIL|1|0|G|1338
8BIL|1|0|G|1339
8BIL|1|0|U|1340
8BIL|1|0|G|1341
8BIL|1|0|A|1342
8BIL|1|0|G|1343
*
8BIL|1|0|C|1404
8BIL|1|0|U|1405
*
8BIL|1|0|A|1597
8BIL|1|0|A|1598
8BIL|1|0|U|1599
8BIL|1|0|C|1600
8BIL|1|0|G|1601
8BIL|1|0|U|1602
8BIL|1|0|A|1603
8BIL|1|0|C|1604

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain c

50S ribosomal protein L34