J4_8BIL_009

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BIL|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIL_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1629

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8BIL|1|0|C|1833
8BIL|1|0|U|1834
8BIL|1|0|G|1835
*
8BIL|1|0|C|1905
8BIL|1|0|G|1906
*
8BIL|1|0|C|1924
8BIL|1|0|C|1925
8BIL|1|0|U|1926
8BIL|1|0|A|1927
8BIL|1|0|A|1928
8BIL|1|0|G|1929
8BIL|1|0|G|1930
8BIL|1|0|U|1931
8BIL|1|0|A|1932
8BIL|1|0|G|1933
*
8BIL|1|0|C|1967
8BIL|1|0|G|1968
8BIL|1|0|A|1969
8BIL|1|0|A|1970
8BIL|1|0|U|1971
8BIL|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2