J4_8BIM_003

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8BIM|1|0|U|653, 8BIM|1|0|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3103

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|0|C|601
8BIM|1|0|A|602
8BIM|1|0|A|603
8BIM|1|0|G|604
*
8BIM|1|0|C|624
8BIM|1|0|G|625
8BIM|1|0|A|626
8BIM|1|0|A|627
8BIM|1|0|G|628
*
8BIM|1|0|C|635
8BIM|1|0|G|636
8BIM|1|0|A|637
8BIM|1|0|G|638
*
8BIM|1|0|C|650
8BIM|1|0|G|651
8BIM|1|0|U|652
8BIM|1|0|U|653
8BIM|1|0|A|654
8BIM|1|0|A|655
8BIM|1|0|G|656

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain d

50S ribosomal protein L35