J4_8BIM_005

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8BIM|1|0|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1308

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|G|1310
8BIM|1|0|G|1311
8BIM|1|0|U|1312
8BIM|1|0|U|1313
8BIM|1|0|C|1314
*
8BIM|1|0|G|1338
8BIM|1|0|G|1339
8BIM|1|0|U|1340
8BIM|1|0|G|1341
8BIM|1|0|A|1342
8BIM|1|0|G|1343
*
8BIM|1|0|C|1404
8BIM|1|0|U|1405
*
8BIM|1|0|A|1597
8BIM|1|0|A|1598
8BIM|1|0|U|1599
8BIM|1|0|C|1600
8BIM|1|0|G|1601
8BIM|1|0|U|1602
8BIM|1|0|A|1603
8BIM|1|0|C|1604

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain c

50S ribosomal protein L34