J4_8BIM_009

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BIM|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BIM_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.162

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8BIM|1|0|C|1833
8BIM|1|0|U|1834
8BIM|1|0|G|1835
*
8BIM|1|0|C|1905
8BIM|1|0|G|1906
*
8BIM|1|0|C|1924
8BIM|1|0|C|1925
8BIM|1|0|U|1926
8BIM|1|0|A|1927
8BIM|1|0|A|1928
8BIM|1|0|G|1929
8BIM|1|0|G|1930
8BIM|1|0|U|1931
8BIM|1|0|A|1932
8BIM|1|0|G|1933
*
8BIM|1|0|C|1967
8BIM|1|0|G|1968
8BIM|1|0|A|1969
8BIM|1|0|A|1970
8BIM|1|0|U|1971
8BIM|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2