J4_8BPO_005
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GG*UGUGAA*UGGAAAG*UC
- Length
- 17 nucleotides
- Bulged bases
- 8BPO|1|A1|A|2696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BPO_005 not in the Motif Atlas
- Homologous match to J4_8GLP_008
- Geometric discrepancy: 0.2415
- The information below is about J4_8GLP_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|G|2618
8BPO|1|A1|G|2619
*
8BPO|1|A1|U|2637
8BPO|1|A1|G|2638
8BPO|1|A1|U|2639
8BPO|1|A1|G|2640
8BPO|1|A1|A|2641
8BPO|1|A1|A|2642
*
8BPO|1|A1|U|2692
8BPO|1|A1|G|2693
8BPO|1|A1|G|2694
8BPO|1|A1|A|2695
8BPO|1|A1|A|2696
8BPO|1|A1|A|2697
8BPO|1|A1|G|2698
*
8BPO|1|A1|U|2718
8BPO|1|A1|C|2719
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain Q2
- 60S ribosomal protein L19
- Chain T2
- 60S ribosomal protein L22
- Chain f2
- 60S ribosomal protein L34
- Chain j2
- 60S ribosomal protein L38
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