J4_8BPO_006
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BPO_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0796
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8BPO|1|A1|G|3634
8BPO|1|A1|A|3635
8BPO|1|A1|C|3636
8BPO|1|A1|U|3637
8BPO|1|A1|G|3638
*
8BPO|1|A1|C|3650
8BPO|1|A1|A|3651
8BPO|1|A1|A|3652
8BPO|1|A1|A|3653
8BPO|1|A1|G|3654
*
8BPO|1|A1|U|3690
8BPO|1|A1|G|3691
8BPO|1|A1|A|3692
8BPO|1|A1|U|3693
8BPO|1|A1|U|3694
*
8BPO|1|A1|A|3821
8BPO|1|A1|U|3822
8BPO|1|A1|G|3823
8BPO|1|A1|A|3824
8BPO|1|A1|A|3825
8BPO|1|A1|C|3826
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
- Chain m2
- 60S ribosomal protein L41
- Chain o2
- 60S ribosomal protein L37a
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