J4_8BPO_007

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8BPO|1|A1|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BPO_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1094

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BPO|1|A1|C|3696
8BPO|1|A1|U|3697
8BPO|1|A1|G|3698
*
8BPO|1|A1|C|3752
8BPO|1|A1|G|3753
*
8BPO|1|A1|C|3771
8BPO|1|A1|U|3772
8BPO|1|A1|U|3773
8BPO|1|A1|A|3774
8BPO|1|A1|A|3775
8BPO|1|A1|G|3776
8BPO|1|A1|G|3777
8BPO|1|A1|U|3778
8BPO|1|A1|A|3779
8BPO|1|A1|G|3780
*
8BPO|1|A1|U|3814
8BPO|1|A1|G|3815
8BPO|1|A1|A|3816
8BPO|1|A1|A|3817
8BPO|1|A1|U|3818
8BPO|1|A1|G|3819

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain A2

60S ribosomal protein L8

Chain m2

60S ribosomal protein L41