J4_8BPO_009
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8BPO|1|A1|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BPO_009 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1787
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BPO|1|A1|C|4231
8BPO|1|A1|U|4232
8BPO|1|A1|A|4233
8BPO|1|A1|A|4234
8BPO|1|A1|G|4235
*
8BPO|1|A1|U|4289
8BPO|1|A1|U|4290
8BPO|1|A1|G|4291
8BPO|1|A1|A|4292
8BPO|1|A1|U|4293
*
8BPO|1|A1|A|4317
8BPO|1|A1|C|4318
8BPO|1|A1|C|4319
*
8BPO|1|A1|G|4328
8BPO|1|A1|G|4329
8BPO|1|A1|G|4330
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain D2
- Ribosomal_L18_c domain-containing protein
- Chain S2
- 60S ribosomal protein L21
- Chain a2
- 60S ribosomal protein L29
- Chain n2
- 60S ribosomal protein L36a-like
Coloring options: