J4_8BRM_001

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CC*GAGUAG*CGAAG*CAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|110
8BRM|1|Lt|C|111
*
8BRM|1|Lt|G|221
8BRM|1|Lt|A|222
8BRM|1|Lt|G|223
8BRM|1|Lt|U|224
8BRM|1|Lt|A|225
8BRM|1|Lt|G|226
*
8BRM|1|Lt|C|247
8BRM|1|Lt|G|248
8BRM|1|Lt|A|249
8BRM|1|Lt|A|250
8BRM|1|Lt|G|251
*
8BRM|1|Lt|C|268
8BRM|1|Lt|A|269
8BRM|1|Lt|A|270
8BRM|1|Lt|G|271

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LM

Ribosomal protein L13

Chain LO

Ribosomal protein L15

Chain Li

Ribosomal protein L29

Chain Lj

Ribosomal protein L36-1