J4_8BRM_003

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCGCUAC*GGAC*GCGCGG*CG

Length

19 nucleotides

Bulged bases

8BRM|1|Lt|C|1140, 8BRM|1|Lt|U|1143, 8BRM|1|Lt|C|1510, 8BRM|1|Lt|G|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|C|1139
8BRM|1|Lt|C|1140
8BRM|1|Lt|G|1141
8BRM|1|Lt|C|1142
8BRM|1|Lt|U|1143
8BRM|1|Lt|A|1144
8BRM|1|Lt|C|1145
*
8BRM|1|Lt|G|1159
8BRM|1|Lt|G|1160
8BRM|1|Lt|A|1161
8BRM|1|Lt|C|1162
*
8BRM|1|Lt|G|1507
8BRM|1|Lt|C|1508
8BRM|1|Lt|G|1509
8BRM|1|Lt|C|1510
8BRM|1|Lt|G|1511
8BRM|1|Lt|G|1512
*
8BRM|1|Lt|C|1840
8BRM|1|Lt|G|1841

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LQ

Ribosomal protein L17

Chain LS

Ribosomal protein L19

Chain Le

Ribosomal protein L31B