J4_8BRM_009

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GCAC*GC*GGG*CGCC

Length

13 nucleotides

Bulged bases

8BRM|1|Lt|A|2429, 8BRM|1|Lt|G|2515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BRM|1|Lt|G|2427
8BRM|1|Lt|C|2428
8BRM|1|Lt|A|2429
8BRM|1|Lt|C|2430
*
8BRM|1|Lt|G|2460
8BRM|1|Lt|C|2461
*
8BRM|1|Lt|G|2514
8BRM|1|Lt|G|2515
8BRM|1|Lt|G|2516
*
8BRM|1|Lt|C|2550
8BRM|1|Lt|G|2551
8BRM|1|Lt|C|2552
8BRM|1|Lt|C|2553

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LB

Ribosomal protein L3

Chain LP

Ribosomal protein L13a

Chain LW

Ribosomal protein L23