J4_8BRM_012
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- UGGCCCCCC*GCAG*CAGCCCCGAGG*CA
- Length
- 26 nucleotides
- Bulged bases
- 8BRM|1|St|C|518, 8BRM|1|St|A|610, 8BRM|1|St|C|613, 8BRM|1|St|G|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BRM|1|St|U|513
8BRM|1|St|G|514
8BRM|1|St|G|515
8BRM|1|St|C|516
8BRM|1|St|C|517
8BRM|1|St|C|518
8BRM|1|St|C|519
8BRM|1|St|C|520
8BRM|1|St|C|521
*
8BRM|1|St|G|583
8BRM|1|St|C|584
8BRM|1|St|A|585
8BRM|1|St|G|586
*
8BRM|1|St|C|609
8BRM|1|St|A|610
8BRM|1|St|G|611
8BRM|1|St|C|612
8BRM|1|St|C|613
8BRM|1|St|C|614
8BRM|1|St|C|615
8BRM|1|St|G|616
8BRM|1|St|A|617
8BRM|1|St|G|618
8BRM|1|St|G|619
*
8BRM|1|St|C|719
8BRM|1|St|A|720
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain LS
- Ribosomal protein L19
- Chain SH
- Ribosomal protein S7
- Chain SJ
- Ribosomal protein S15A
- Chain SM
- Ribosomal protein S11
- Chain SO
- Ribosomal protein S23
- Chain SP
- Ribosomal protein S13
- Chain Se
- Ribosomal protein S27
Coloring options: