J4_8BRM_014
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- GGUUC*GGUGAC*GG*CGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8BRM|1|Lt|G|1207
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BRM_014 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.1173
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BRM|1|Lt|G|1176
8BRM|1|Lt|G|1177
8BRM|1|Lt|U|1178
8BRM|1|Lt|U|1179
8BRM|1|Lt|C|1180
*
8BRM|1|Lt|G|1204
8BRM|1|Lt|G|1205
8BRM|1|Lt|U|1206
8BRM|1|Lt|G|1207
8BRM|1|Lt|A|1208
8BRM|1|Lt|C|1209
*
8BRM|1|Lt|G|1287
8BRM|1|Lt|G|1288
*
8BRM|1|Lt|C|1464
8BRM|1|Lt|G|1465
8BRM|1|Lt|C|1466
8BRM|1|Lt|C|1467
8BRM|1|Lt|G|1468
8BRM|1|Lt|U|1469
8BRM|1|Lt|A|1470
8BRM|1|Lt|C|1471
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LD
- 5.8S rRNA
- Chain LG
- Ribosomal protein L39
- Chain LS
- Ribosomal protein L19
- Chain LY
- Ribosomal protein L23A
- Chain Lh
- Ribosomal protein L34
- Chain Li
- Ribosomal protein L29
- Chain Lk
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein L38e
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