J4_8BTK_005

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8BTK|1|B5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|C|196
8BTK|1|B5|A|197
8BTK|1|B5|A|198
8BTK|1|B5|G|199
*
8BTK|1|B5|C|215
8BTK|1|B5|C|216
8BTK|1|B5|C|217
8BTK|1|B5|A|218
8BTK|1|B5|G|219
8BTK|1|B5|C|220
8BTK|1|B5|C|221
8BTK|1|B5|C|222
*
8BTK|1|B5|G|226
8BTK|1|B5|A|227
8BTK|1|B5|C|228
*
8BTK|1|B5|G|240
8BTK|1|B5|G|241
8BTK|1|B5|U|242
8BTK|1|B5|A|243
8BTK|1|B5|G|244

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BY

Ribosomal protein L26