J4_8BTK_011

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8BTK|1|B5|A|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|G|2461
8BTK|1|B5|G|2462
*
8BTK|1|B5|U|2480
8BTK|1|B5|G|2481
8BTK|1|B5|U|2482
8BTK|1|B5|G|2483
8BTK|1|B5|A|2484
8BTK|1|B5|A|2485
*
8BTK|1|B5|U|2535
8BTK|1|B5|G|2536
8BTK|1|B5|G|2537
8BTK|1|B5|A|2538
8BTK|1|B5|A|2539
8BTK|1|B5|A|2540
8BTK|1|B5|G|2541
*
8BTK|1|B5|U|2561
8BTK|1|B5|C|2562

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BU

60S ribosomal protein L22

Chain Bg

60S ribosomal protein L34

Chain Bk

eL38