J4_8BUU_004
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAAG*CC*GAUC*GG
- Length
- 14 nucleotides
- Bulged bases
- 8BUU|1|A|G|1311, 8BUU|1|A|A|1312, 8BUU|1|A|A|1314, 8BUU|1|A|U|1692
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BUU_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.1012
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BUU|1|A|C|1310
8BUU|1|A|G|1311
8BUU|1|A|A|1312
8BUU|1|A|A|1313
8BUU|1|A|A|1314
8BUU|1|A|G|1315
*
8BUU|1|A|C|1333
8BUU|1|A|C|1334
*
8BUU|1|A|G|1690
8BUU|1|A|A|1691
8BUU|1|A|U|1692
8BUU|1|A|C|1693
*
8BUU|1|A|G|2038
8BUU|1|A|G|2039
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: