J4_8BUU_009
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAAG
- Length
- 21 nucleotides
- Bulged bases
- 8BUU|1|A|A|2000
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8BUU_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0876
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8BUU|1|A|C|1862
8BUU|1|A|U|1863
8BUU|1|A|G|1864
*
8BUU|1|A|C|1934
8BUU|1|A|G|1935
*
8BUU|1|A|C|1953
8BUU|1|A|C|1954
8BUU|1|A|U|1955
8BUU|1|A|A|1956
8BUU|1|A|A|1957
8BUU|1|A|G|1958
8BUU|1|A|G|1959
8BUU|1|A|U|1960
8BUU|1|A|A|1961
8BUU|1|A|G|1962
*
8BUU|1|A|C|1996
8BUU|1|A|G|1997
8BUU|1|A|A|1998
8BUU|1|A|A|1999
8BUU|1|A|A|2000
8BUU|1|A|G|2001
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 9
- ExpZ
- Chain C
- 50S ribosomal protein L2
- Chain V
- Transfer RNA; tRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: