J4_8BYV_001

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BYV|1|a|G|114
8BYV|1|a|A|115
8BYV|1|a|G|116
8BYV|1|a|U|117
8BYV|1|a|A|118
8BYV|1|a|A|119
8BYV|1|a|C|120
8BYV|1|a|A|121
8BYV|1|a|C|122
*
8BYV|1|a|G|246
8BYV|1|a|C|247
8BYV|1|a|U|248
*
8BYV|1|a|A|294
8BYV|1|a|U|295
8BYV|1|a|A|296
8BYV|1|a|G|297
*
8BYV|1|a|C|319
8BYV|1|a|C|320

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17