J4_8C8X_009

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8C8X|1|A|C|1925, 8C8X|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C8X_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4685

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8C8X|1|A|C|1833
8C8X|1|A|U|1834
8C8X|1|A|G|1835
*
8C8X|1|A|C|1905
8C8X|1|A|G|1906
*
8C8X|1|A|C|1924
8C8X|1|A|C|1925
8C8X|1|A|U|1926
8C8X|1|A|A|1927
8C8X|1|A|A|1928
8C8X|1|A|G|1929
8C8X|1|A|G|1930
8C8X|1|A|U|1931
8C8X|1|A|A|1932
8C8X|1|A|G|1933
*
8C8X|1|A|C|1967
8C8X|1|A|G|1968
8C8X|1|A|A|1969
8C8X|1|A|A|1970
8C8X|1|A|U|1971
8C8X|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains