J4_8C8Y_002

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C8Y_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0687

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8C8Y|1|A|G|297
8C8Y|1|A|G|298
8C8Y|1|A|A|299
8C8Y|1|A|A|300
8C8Y|1|A|G|301
*
8C8Y|1|A|C|316
8C8Y|1|A|G|317
8C8Y|1|A|C|318
8C8Y|1|A|G|319
*
8C8Y|1|A|C|323
8C8Y|1|A|A|324
8C8Y|1|A|G|325
*
8C8Y|1|A|C|337
8C8Y|1|A|G|338
8C8Y|1|A|U|339
8C8Y|1|A|A|340
8C8Y|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24