3D structure

PDB id
8C8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.03 Å

Loop

Sequence
CUGC*GCGG*UCCUAAGGUAG*CGAAUG
Length
25 nucleotides
Bulged bases
8C8Y|1|A|C|1925, 8C8Y|1|A|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8C8Y|1|A|C|1833
8C8Y|1|A|U|1834
8C8Y|1|A|G|1835
8C8Y|1|A|C|1836
*
8C8Y|1|A|G|1904
8C8Y|1|A|C|1905
8C8Y|1|A|G|1906
8C8Y|1|A|G|1907
*
8C8Y|1|A|U|1923
8C8Y|1|A|C|1924
8C8Y|1|A|C|1925
8C8Y|1|A|U|1926
8C8Y|1|A|A|1927
8C8Y|1|A|A|1928
8C8Y|1|A|G|1929
8C8Y|1|A|G|1930
8C8Y|1|A|U|1931
8C8Y|1|A|A|1932
8C8Y|1|A|G|1933
*
8C8Y|1|A|C|1967
8C8Y|1|A|G|1968
8C8Y|1|A|A|1969
8C8Y|1|A|A|1970
8C8Y|1|A|U|1971
8C8Y|1|A|G|1972

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:

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