3D structure

PDB id
8C8Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.03 Å

Loop

Sequence
GC*GC*GUGAUCC*GCUCAAC
Length
18 nucleotides
Bulged bases
8C8Y|1|A|U|2390, 8C8Y|1|A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8C8Y|1|A|G|2282
8C8Y|1|A|C|2283
*
8C8Y|1|A|G|2325
8C8Y|1|A|C|2326
*
8C8Y|1|A|G|2389
8C8Y|1|A|U|2390
8C8Y|1|A|G|2391
8C8Y|1|A|A|2392
8C8Y|1|A|U|2393
8C8Y|1|A|C|2394
8C8Y|1|A|C|2395
*
8C8Y|1|A|G|2421
8C8Y|1|A|C|2422
8C8Y|1|A|U|2423
8C8Y|1|A|C|2424
8C8Y|1|A|A|2425
8C8Y|1|A|A|2426
8C8Y|1|A|C|2427

Current chains

Chain A
23S rRNA

Nearby chains

Chain L
50S ribosomal protein L15

Coloring options:

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