J4_8C8Z_003

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8C8Z|1|A|U|653, 8C8Z|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C8Z_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2653

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8C8Z|1|A|C|601
8C8Z|1|A|A|602
8C8Z|1|A|A|603
8C8Z|1|A|G|604
*
8C8Z|1|A|C|624
8C8Z|1|A|G|625
8C8Z|1|A|A|626
8C8Z|1|A|A|627
8C8Z|1|A|G|628
*
8C8Z|1|A|C|635
8C8Z|1|A|G|636
8C8Z|1|A|A|637
8C8Z|1|A|G|638
*
8C8Z|1|A|C|650
8C8Z|1|A|G|651
8C8Z|1|A|U|652
8C8Z|1|A|U|653
8C8Z|1|A|A|654
8C8Z|1|A|A|655
8C8Z|1|A|G|656

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15