J4_8C8Z_005

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8C8Z|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C8Z_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0904

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C8Z|1|A|G|1310
8C8Z|1|A|G|1311
8C8Z|1|A|U|1312
8C8Z|1|A|U|1313
8C8Z|1|A|C|1314
*
8C8Z|1|A|G|1338
8C8Z|1|A|G|1339
8C8Z|1|A|U|1340
8C8Z|1|A|G|1341
8C8Z|1|A|A|1342
8C8Z|1|A|G|1343
*
8C8Z|1|A|C|1404
8C8Z|1|A|U|1405
*
8C8Z|1|A|A|1597
8C8Z|1|A|A|1598
8C8Z|1|A|U|1599
8C8Z|1|A|C|1600
8C8Z|1|A|G|1601
8C8Z|1|A|U|1602
8C8Z|1|A|A|1603
8C8Z|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23