J4_8C90_003

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8C90|1|A|U|653, 8C90|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8C90_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.221

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8C90|1|A|C|601
8C90|1|A|A|602
8C90|1|A|A|603
8C90|1|A|G|604
*
8C90|1|A|C|624
8C90|1|A|G|625
8C90|1|A|A|626
8C90|1|A|A|627
8C90|1|A|G|628
*
8C90|1|A|C|635
8C90|1|A|G|636
8C90|1|A|A|637
8C90|1|A|G|638
*
8C90|1|A|C|650
8C90|1|A|G|651
8C90|1|A|U|652
8C90|1|A|U|653
8C90|1|A|A|654
8C90|1|A|A|655
8C90|1|A|G|656

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15