J4_8CAS_001
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GU(1MG)(2MG)*C(M2G)C*GAU(G7M)(H2U)(5MC)(5MC)*GC
- Length
- 16 nucleotides
- Bulged bases
- 8CAS|1|1|U|8, 8CAS|1|1|H2U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CAS_001 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.4859
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8CAS|1|1|G|7
8CAS|1|1|U|8
8CAS|1|1|1MG|9
8CAS|1|1|2MG|10
*
8CAS|1|1|C|25
8CAS|1|1|M2G|26
8CAS|1|1|C|27
*
8CAS|1|1|G|43
8CAS|1|1|A|44
8CAS|1|1|U|45
8CAS|1|1|G7M|46
8CAS|1|1|H2U|47
8CAS|1|1|5MC|48
8CAS|1|1|5MC|49
*
8CAS|1|1|G|65
8CAS|1|1|C|66
Current chains
- Chain 1
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 40S ribosomal protein S25-A
- Chain j
- SUI2 isoform 1
- Chain m
- TIF5 isoform 1
- Chain s
- SUI3 isoform 1
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