J4_8CCS_014

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

UACAU*AUGCUUAAAAU*AUG*CGAA

Length

23 nucleotides

Bulged bases

8CCS|1|c|C|139, 8CCS|1|c|A|140, 8CCS|1|c|U|178, 8CCS|1|c|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CCS|1|c|U|137
8CCS|1|c|A|138
8CCS|1|c|C|139
8CCS|1|c|A|140
8CCS|1|c|U|141
*
8CCS|1|c|A|173
8CCS|1|c|U|174
8CCS|1|c|G|175
8CCS|1|c|C|176
8CCS|1|c|U|177
8CCS|1|c|U|178
8CCS|1|c|A|179
8CCS|1|c|A|180
8CCS|1|c|A|181
8CCS|1|c|A|182
8CCS|1|c|U|183
*
8CCS|1|c|A|202
8CCS|1|c|U|203
8CCS|1|c|G|204
*
8CCS|1|c|C|263
8CCS|1|c|G|264
8CCS|1|c|A|265
8CCS|1|c|A|266

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A

Chain l

40S ribosomal protein S8-B